Fix valgrind uninitialized memory errors

Fixed multiple uninitialized memory issues detected by valgrind:

1. SHA256 struct size mismatch: Changed from 64 bytes to 32 bytes to
   match the actual output of sha256() function (which produces 256
   bits = 32 bytes).

2. File tree chunk allocation: Fixed loop that wasn't initializing
   newly allocated chunks because num_chunks was updated before the
   initialization loop. Now saves old_num_chunks first.

3. Metadata server process_client_write: Initialized results[i].num_addrs
   to 0 before use to prevent reading uninitialized value.

4. Address struct initialization: Zero-initialize Address structs before
   setting fields to ensure the entire union is initialized (union
   contains either IPv4 or IPv6, leaving unused bytes uninitialized).

5. Fixed bug in IPv6 address creation: Changed incorrect is_ipv4=true
   to is_ipv4=false for IPv6 addresses.

6. Fixed all_chunk_servers_holding_chunk: Function was incrementing
   counter for all chunk servers instead of only those containing the
   hash, causing access to uninitialized array elements.

All valgrind errors resolved: ERROR SUMMARY: 0 errors from 0 contexts

src/basic.h

@@ -5,7 +5,7 @@
 #include <stdbool.h>
 
 typedef struct {
-    char data[64];
+    char data[32];
 } SHA256;
 
 typedef struct {

src/file_tree.c

@@ -341,17 +341,18 @@ int file_tree_write(FileTree *ft, string path,
     uint64_t  last_chunk_index = (off + len - 1) / f->chunk_size;
 
     if (last_chunk_index >= f->num_chunks) {
+        uint64_t old_num_chunks = f->num_chunks;
         SHA256 *new_chunks = sys_malloc((last_chunk_index+1) * sizeof(SHA256));
         if (new_chunks == NULL)
             return FILETREE_NOMEM;
         if (f->chunks) {
             if (f->num_chunks > 0)
-                memcpy(new_chunks, f->chunks, f->num_chunks);
+                memcpy(new_chunks, f->chunks, f->num_chunks * sizeof(SHA256));
             sys_free(f->chunks);
         }
         f->chunks = new_chunks;
         f->num_chunks = last_chunk_index+1;
-        for (uint64_t i = f->num_chunks; i < last_chunk_index+1; i++)
+        for (uint64_t i = old_num_chunks; i < last_chunk_index+1; i++)
             memset(&f->chunks[i], 0, sizeof(SHA256));
     }
 

src/metadata_server.c

@@ -92,10 +92,12 @@ all_chunk_servers_holding_chunk(MetadataServer *state, SHA256 hash, int *out, in
 {
     int num = 0;
     for (int i = 0; i < state->num_chunk_servers; i++) {
-        if (num < max && chunk_server_peer_contains(&state->chunk_servers[i], hash))
+        if (chunk_server_peer_contains(&state->chunk_servers[i], hash)) {
+            if (num < max)
                 out[num] = i;
             num++;
         }
+    }
     return num;
 }
 
@@ -579,6 +581,7 @@ process_client_write(MetadataServer *state, int conn_idx, ByteView msg)
 
         results[i].old_hash = old_hash;
         results[i].new_hash = new_hash;
+        results[i].num_addrs = 0;
 
         uint32_t num_locations;
         if (!binary_read(&reader, &num_locations, sizeof(num_locations)))
@@ -590,7 +593,7 @@ process_client_write(MetadataServer *state, int conn_idx, ByteView msg)
             if (!binary_read(&reader, &is_ipv4, sizeof(is_ipv4)))
                 return -1;
 
-            Address addr;
+            Address addr = {0};
             addr.is_ipv4 = is_ipv4;
 
             if (is_ipv4) {
@@ -736,9 +739,13 @@ static int process_chunk_server_auth(MetadataServer *state,
             if (!binary_read(&reader, &port, sizeof(port)))
                 return -1;
 
-            if (chunk_server->num_addrs < MAX_SERVER_ADDRS)
+            if (chunk_server->num_addrs < MAX_SERVER_ADDRS) {
-                chunk_server->addrs[chunk_server->num_addrs++] =
+                Address addr = {0};
-                    (Address) { .ipv4=ipv4, .is_ipv4=true, .port=port };
+                addr.ipv4 = ipv4;
+                addr.is_ipv4 = true;
+                addr.port = port;
+                chunk_server->addrs[chunk_server->num_addrs++] = addr;
+            }
         }
     }
 
@@ -758,9 +765,13 @@ static int process_chunk_server_auth(MetadataServer *state,
             if (!binary_read(&reader, &port, sizeof(port)))
                 return -1;
 
-            if (chunk_server->num_addrs < MAX_SERVER_ADDRS)
+            if (chunk_server->num_addrs < MAX_SERVER_ADDRS) {
-                chunk_server->addrs[chunk_server->num_addrs++] =
+                Address addr = {0};
-                    (Address) { .is_ipv4=true, .ipv6=ipv6, .port=port };
+                addr.ipv6 = ipv6;
+                addr.is_ipv4 = false;
+                addr.port = port;
+                chunk_server->addrs[chunk_server->num_addrs++] = addr;
+            }
         }
     }